Title

The CRISPR-Cas9 crADSL HeLa Transcriptome: A First Step in Establishing a Model for ADSL Deficiency and SAICAR Accumulation

Document Type

Article

Publication Date

9-4-2019

Keywords

RNA-seq, Purine synthesis, Transcriptome, Adenylosuccinate lyase

Organizational Units

Knoebel Institute for Healthy Aging

Abstract

Adenylosuccinate lyase (ADSL) catalyzes two steps in de novo purine synthesis (DNPS). Mutations in ADSL can result in inborn errors of metabolism characterized by developmental delay and disorder phenotypes, with no effective treatment options. Recently, SAICAR, a metabolic substrate of ADSL, has been found to have alternative roles in the cell, complicating the role of ADSL. crADSL, a CRISPR KO of ADSL in HeLa cells, was constructed to investigate DNPS and ADSL in a human cell line. Here we employ this cell line in an RNA-seq analysis to initially investigate the effect of DNPS and ADSL deficiency on the transcriptome as a first step in establishing a cellular model of ADSL deficiency. We report transcriptome changes in genes relevant to development, vascular development, muscle, and cancer biology, which provide interesting avenues for future research.

Publication Statement

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